Cancer-miRNA Regulatory Network

Compendium of miRNA Target Genes

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Mrna Metabolic Process (GO:0016071) Genes Targeted by hsa-mir-655 in AD Lung Bhattacharjee Cluster 58 Table contains all genes in the AD Lung Bhattacharjee cluster number 58. If a gene harbors a predicted miRNA binding site by one of the three inference methods it is displayed in the final column: M = Weeder-miRvestigator predicted site, P = PITA predicted site and T = TargetScan predicted site. Entrez ID Symbol Description hsa-mir-655 GO:0016071 22838 RNF44 ring finger protein 44 [Source:HGNC Symbol;Acc:19180] P T 283349 RASSF3 Ras association (RalGDS/AF-6) domain family member 3 [Source:HGNC Symbol;Acc:14271] zzz999 9098 USP6 ubiquitin specific peptidase 6 (Tre-2 oncogene) [Source:HGNC Symbol;Acc:12629] zzz999 4281 MID1 midline 1 (Opitz/BBB syndrome) [Source:HGNC Symbol;Acc:7095] P T 23360 FNBP4 formin binding protein 4 [Source:HGNC Symbol;Acc:19752] T 23019 CNOT1 CCR4-NOT transcription complex, subunit 1 [Source:HGNC Symbol;Acc:7877] zzz999 Yes 65110 UPF3A UPF3 regulator of nonsense transcripts homolog A (yeast) [Source:HGNC Symbol;Acc:20332] T Yes 171023 ASXL1 additional sex combs like 1 (Drosophila) [Source:HGNC Symbol;Acc:18318] zzz999 155066 ATP6V0E2 ATPase, H+ transporting V0 subunit e2 [Source:HGNC Symbol;Acc:21723] zzz999 3054 HCFC1 host cell factor C1 (VP16-accessory protein) [Source:HGNC Symbol;Acc:4839] P T 604 BCL6 B-cell CLL/lymphoma 6 [Source:HGNC Symbol;Acc:1001] P T 1654 DDX3X DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked [Source:HGNC Symbol;Acc:2745] P T 4140 MARK3 MAP/microtubule affinity-regulating kinase 3 [Source:HGNC Symbol;Acc:6897] zzz999 8202 NCOA3 nuclear receptor coactivator 3 [Source:HGNC Symbol;Acc:7670] P T 8125 ANP32A acidic (leucine-rich) nuclear phosphoprotein 32 family, member A [Source:HGNC Symbol;Acc:13233] zzz999 Yes 7155 TOP2B topoisomerase (DNA) II beta 180kDa [Source:HGNC Symbol;Acc:11990] zzz999 91746 YTHDC1 YTH domain containing 1 [Source:HGNC Symbol;Acc:30626] T Yes 51747 LUC7L3 LUC7-like 3 (S. cerevisiae) [Source:HGNC Symbol;Acc:24309] T Yes 11044 PAPD7 PAP associated domain containing 7 [Source:HGNC Symbol;Acc:16705] zzz999 55186 SLC25A36 solute carrier family 25, member 36 [Source:HGNC Symbol;Acc:25554] T 23039 XPO7 exportin 7 [Source:HGNC Symbol;Acc:14108] P T 7750 ZMYM2 zinc finger, MYM-type 2 [Source:HGNC Symbol;Acc:12989] zzz999 3189 HNRNPH3 heterogeneous nuclear ribonucleoprotein H3 (2H9) [Source:HGNC Symbol;Acc:5043] T Yes 23332 CLASP1 cytoplasmic linker associated protein 1 [Source:HGNC Symbol;Acc:17088] T 134728 IRAK1BP1 interleukin-1 receptor-associated kinase 1 binding protein 1 [Source:HGNC Symbol;Acc:17368] T 4698 NDUFA5 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5, 13kDa [Source:HGNC Symbol;Acc:7688] T 23032 USP33 ubiquitin specific peptidase 33 [Source:HGNC Symbol;Acc:20059] T 2033 EP300 E1A binding protein p300 [Source:HGNC Symbol;Acc:3373] P T 4926 NUMA1 nuclear mitotic apparatus protein 1 [Source:HGNC Symbol;Acc:8059] zzz999 10605 PAIP1 poly(A) binding protein interacting protein 1 [Source:HGNC Symbol;Acc:16945] zzz999 Yes 23241 PACS2 phosphofurin acidic cluster sorting protein 2 [Source:HGNC Symbol;Acc:23794] zzz999 7265 TTC1 tetratricopeptide repeat domain 1 [Source:HGNC Symbol;Acc:12391] zzz999 23137 SMC5 structural maintenance of chromosomes 5 [Source:HGNC Symbol;Acc:20465] zzz999 29994 BAZ2B bromodomain adjacent to zinc finger domain, 2B [Source:HGNC Symbol;Acc:963] P T 6879 TAF7 TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 55kDa [Source:HGNC Symbol;Acc:11541] T 546 ATRX alpha thalassemia/mental retardation syndrome X-linked [Source:HGNC Symbol;Acc:886] T 23126 POGZ pogo transposable element with ZNF domain [Source:HGNC Symbol;Acc:18801] zzz999 84220 RGPD6 RANBP2-like and GRIP domain containing 6 [Source:HGNC Symbol;Acc:32419] T 23515 MORC3 MORC family CW-type zinc finger 3 [Source:HGNC Symbol;Acc:23572] zzz999 8675 STX16 syntaxin 16 [Source:HGNC Symbol;Acc:11431] T 9877 ZC3H11A zinc finger CCCH-type containing 11A [Source:HGNC Symbol;Acc:29093] P T 10299 MARCH6 membrane-associated ring finger (C3HC4) 6 [Source:HGNC Symbol;Acc:30550] T 23370 ARHGEF18 Rho/Rac guanine nucleotide exchange factor (GEF) 18 [Source:HGNC Symbol;Acc:17090] zzz999 22878 TRAPPC8 trafficking protein particle complex 8 [Source:HGNC Symbol;Acc:29169] P T 22978 NT5C2 5'-nucleotidase, cytosolic II [Source:HGNC Symbol;Acc:8022] P T 5718 PSMD12 proteasome (prosome, macropain) 26S subunit, non-ATPase, 12 [Source:HGNC Symbol;Acc:9557] zzz999 Yes 26036 ZNF451 zinc finger protein 451 [Source:HGNC Symbol;Acc:21091] zzz999 9698 PUM1 pumilio homolog 1 (Drosophila) [Source:HGNC Symbol;Acc:14957] zzz999 79036 C19orf50 chromosome 19 open reading frame 50 [Source:HGNC Symbol;Acc:28420] zzz999 23271 CAMSAP1L1 calmodulin regulated spectrin-associated protein 1-like 1 [Source:HGNC Symbol;Acc:29188] P T 10658 CELF1 CUGBP, Elav-like family member 1 [Source:HGNC Symbol;Acc:2549] zzz999 Yes 51592 TRIM33 tripartite motif containing 33 [Source:HGNC Symbol;Acc:16290] P T 5921 RASA1 RAS p21 protein activator (GTPase activating protein) 1 [Source:HGNC Symbol;Acc:9871] zzz999 79921 TCEAL4 transcription elongation factor A (SII)-like 4 [Source:HGNC Symbol;Acc:26121] zzz999 11325 DDX42 DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 [Source:HGNC Symbol;Acc:18676] zzz999 5257 PHKB phosphorylase kinase, beta [Source:HGNC Symbol;Acc:8927] zzz999 5764 PTN pleiotrophin [Source:HGNC Symbol;Acc:9630] zzz999 6653 SORL1 sortilin-related receptor, L(DLR class) A repeats containing [Source:HGNC Symbol;Acc:11185] zzz999 4086 SMAD1 SMAD family member 1 [Source:HGNC Symbol;Acc:6767] zzz999 3631 INPP4A inositol polyphosphate-4-phosphatase, type I, 107kDa [Source:HGNC Symbol;Acc:6074] zzz999 4891 SLC11A2 solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2 [Source:HGNC Symbol;Acc:10908] zzz999 10250 SRRM1 serine/arginine repetitive matrix 1 [Source:HGNC Symbol;Acc:16638] P T Yes 6635 SNRPE small nuclear ribonucleoprotein polypeptide E [Source:HGNC Symbol;Acc:11161] P T Yes 10147 SUGP2 SURP and G patch domain containing 2 [Source:HGNC Symbol;Acc:18641] zzz999 Yes 94239 H2AFV H2A histone family, member V [Source:HGNC Symbol;Acc:20664] T 11231 SEC63 SEC63 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:21082] P T 1381 CRABP1 cellular retinoic acid binding protein 1 [Source:HGNC Symbol;Acc:2338] zzz999 22794 CASC3 cancer susceptibility candidate 3 [Source:HGNC Symbol;Acc:17040] zzz999 Yes 6767 ST13 suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) [Source:HGNC Symbol;Acc:11343] zzz999 9584 RBM39 RNA binding motif protein 39 [Source:HGNC Symbol;Acc:15923] zzz999 Yes

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